PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473256
Common NameARALYDRAFT_473256
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 892aa    MW: 98694.1 Da    PI: 6.4765
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473256genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.3e-24129230199
             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l++++
  473256 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQLLLGI 227
             99*****************************8544444..48************************************************..7888889**** PP

             E-S CS
      B3  97 frk 99 
             +r+
  473256 228 RRA 230
             997 PP

2Auxin_resp117.98.5e-39255338183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp+rW nS+Wrs+k
      473256 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPSRWANSHWRSVK 338
                 79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-48114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-41122244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-20128229No hitNo description
SMARTSM010191.9E-24129231IPR003340B3 DNA binding domain
PfamPF023624.8E-22129230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464129231IPR003340B3 DNA binding domain
PfamPF065077.4E-34255338IPR010525Auxin response factor
SuperFamilySSF542772.94E-7745827No hitNo description
PROSITE profilePS5174524.173752836IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV  120
PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ICDLDPSRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS PLMWDRGLQS LNFQGMGGNP  420
WMQPRLDASG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSSG FSMQSPSLVQ  480
PQMLQQQLSQ QQQQQLSQQQ QQLSQQQQQQ QQLSQQQQQQ QLSQQQQQQL SQQQQQHAYL  540
GVPETHQPQS QAQSQSNNHL SQQQQQVENN HNPSASSAAV VSAMSQYGSA SQSNTSPLQS  600
MTSLCHQQSF SDTNGGNNPI SPLHTLLSNF SQDESSQLLN LTRTNSAMTS SGWPSKRPAC  660
SIEQEVSASD PHSHLLFGVN IDSSSLLMPN GMSNLRSIGI EGGDSTALPF TSSNFNNDFS  720
GNLAMTTPSS CIDESGFLQS SENLGTENPQ SNTFVKVYKS GSFGRSLDIS KFSSYHELRS  780
ELARMFGLEG QLEDPVRSGW QLVFVDREND VLLLGDDPWP EFVSSVWCIK ILSPQEVQQM  840
GKRGLELLNS APSSNNVDKL PSNGNCDDFG NRSDPRNLGN GIASVGGSFN Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601835947388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6697880.0AY669788.1 Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893612.10.0hypothetical protein ARALYDRAFT_473256
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLD7KET20.0D7KET2_ARALL; Auxin response factor
STRINGfgenesh2_kg.1__3210__AT1G30330.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6